Assoc. Prof. MEHMET AYDIN AKBUDAK

Metrics

Publication

Citation (WoS)

598

H-Index (WoS)

Citation (Scopus)

319

H-Index (Scopus)

Citation (Scholar)

331

H-Index (Scholar)

Citiation (TrDizin)

H-Index (TrDizin)

Project

Intellectual Property

Open Access

UN Sustainable Development Goals

Education Information

2013 - 2014

Post Doctorate

Institute Of Molecular Genetics Of The Cas, Prague, Transgenic Models Of Diseases, Czech Republic

2010 - 2012

Post Doctorate

University of Arkansas at Fayetteville, Bitki Ve Cevre Bilimleri, Bitki Biyoteknolojisi, United States Of America

2006 - 2010

Doctorate

University of Arkansas at Fayetteville, Hücre Ve Moleküler Biyoloji , Bitki Biyoteknolojisi, United States Of America

1999 - 2002

Postgraduate

Selcuk University, Fen Bilimleri Enstitusu, Tarla Bitkileri, Turkey

1996 - 1999

Undergraduate

Selcuk University, Ziraat Fakultesi, Tarla Bitkileri, Turkey

Dissertations

2010

Doctorate

Applications of site-specific recombination systems in transgene expression and marker gene removal

University of Arkansas at Fayetteville, Graduate School, Cell And Molecular Biology

Foreign Languages

C1 Advanced

English

Research Areas

Life Sciences

Biotechnology

Plant Biotechnology

Molecular Biology and Genetics

Plant Molecular Genetics

Genetic Engineering

Natural Sciences

Academic Titles / Tasks

2019 - Continues

Associate Professor

Akdeniz University, Faculty of Agriculture, Department of Agricultural Biotechnology

2015 - 2019

Assistant Professor

Akdeniz University, Faculty of Agriculture, Department of Agricultural Biotechnology

2012 - 2015

Assistant Professor

Necmettin Erbakan University, Faculty Of Scıence, Molekuler Biyoloji Ve Genetik

2010 - 2012

Research Assistant PhD

University of Arkansas at Fayetteville, Dale Bumpers College Of Agriculture, Crop, Soil And Environmental Sciences

2006 - 2010

Research Assistant

University of Arkansas at Fayetteville, Graduate School, Cell & Molecular Biology

Courses

Doctorate

Yeni Nesil Genom Düzenleme Teknikleri ve Bitki Islahında Kullanımı

Undergraduate

Recombinant DNA Technologies

Undergraduate

Introduction to Bioinformatics

Doctorate

Advanced Plant Biotechnology

Published journal articles indexed by SCI, SSCI, and AHCI

2024

GpEF1A: a novel lysine methyltransferase gene from Gypsophila perfoliata L. involved in boron homeostasis

AKBUDAK M. A., Cirik N., Erdeger S., Filiz E., Dogu S., BOR M.

Plant Biology , vol.26, no.5, pp.727-734, 2024 (SCI-Expanded)

2024

Genome-wide exploration and analysis of plant stress-responsive CAMTA transcription factor genes in Brachypodium distachyon and their expression patterns under environmental challenges

AKBUDAK M. A., ÇETİN D., Filiz E., Srivastava V.

South African Journal of Botany , vol.166, pp.208-217, 2024 (SCI-Expanded)

2024

A genome sequence resource for the European chestnut (Castanea sativa Mill.) and the development of genic microsatellite markers

Uncu A. O., ÇETİN D., Srivastava V., Uncu A. T., AKBUDAK M. A.

Genetic Resources and Crop Evolution , 2024 (SCI-Expanded)

2024

Characterization of ZmSnRK1 genes and their response to aphid feeding, drought and cold stress

AKBUDAK M. A., Yildiz K., ÇETİN D., Filiz E., YÜKSELBABA U., Srivastava V.

Genetic Resources and Crop Evolution , 2024 (SCI-Expanded)

2023

Genome-Wide Identification, Characterization and Expression Profiling of Potato (Solanum tuberosum) Frataxin (FH) Gene

Kurt F., Filiz E., Yildiz K., AKBUDAK M. A.

Genes , vol.14, no.2, 2023 (SCI-Expanded)

2022

Mitochondrial iron transporter (MIT) gene in potato (Solanum tuberosum): comparative bioinformatics, physiological and expression analyses in response to drought and salinity

Kurt F., Kurt B., Filiz E., Yildiz K., AKBUDAK M. A.

BioMetals , vol.35, no.5, pp.875-887, 2022 (SCI-Expanded)

2022

Genes involved in mRNA surveillance are induced in Brachypodium distachyon under cadmium toxicity

AKSOY E., Uncu A. T., Filiz E., ORMAN Ş., ÇETİN D., AKBUDAK M. A.

MOLECULAR BIOLOGY REPORTS , vol.49, no.6, pp.5303-5313, 2022 (SCI-Expanded)

2022

Genome-wide identification and characterization of high-affinity nitrate transporter 2 (NRT2) gene family in tomato (Solanum lycopersicum) and their transcriptional responses to drought and salinity stresses

AKBUDAK M. A., Filiz E., ÇETİN D.

Journal of Plant Physiology , vol.272, 2022 (SCI-Expanded)

2020

Genome-wide investigation of proline transporter (ProT) gene family in tomato: Bioinformatics and expression analyses in response to drought stress

AKBUDAK M. A., FİLİZ E.

PLANT PHYSIOLOGY AND BIOCHEMISTRY , vol.157, pp.13-22, 2020 (SCI-Expanded)

2020

Pathogenesis related protein-1 (PR-1) genes in tomato (Solanum lycopersicum L.): Bioinformatics analyses and expression profiles in response to drought stress

AKBUDAK M. A., YİLDİZ S., Filiz E.

GENOMICS , vol.112, no.6, pp.4089-4099, 2020 (SCI-Expanded)

2020

Novel TALEN-generated mCitrine-FANCD2 fusion reporter mouse model for in vivo research of DNA damage response

Sabol M., Akbudak M. A., Fricova D., Beck I., Sedlacek R.

DNA REPAIR , vol.94, 2020 (SCI-Expanded)

2020

Ammonium transporter 1 (AMT1) gene family in tomato (Solanum lycopersicum L.): Bioinformatics, physiological and expression analyses under drought and salt stresses

Filiz E., AKBUDAK M. A.

GENOMICS , vol.112, no.5, pp.3773-3782, 2020 (SCI-Expanded)

2020

Investigation of PIC1 (permease in chloroplasts 1) gene's role in iron homeostasis: bioinformatics and expression analyses in tomato and sorghum

Filiz E., Aydin Akbudak M. A.

BIOMETALS , vol.33, no.1, pp.29-44, 2020 (SCI-Expanded)

2019

Whirly (Why) transcription factors in tomato (Solanum lycopersicum L.): genome-wide identification and transcriptional profiling under drought and salt stresses

AKBUDAK M. A., Filiz E.

MOLECULAR BIOLOGY REPORTS , vol.46, no.4, pp.4139-4150, 2019 (SCI-Expanded)

2019

Genome-wide analyses of ATP sulfurylase (ATPS) genes in higher plants and expression profiles in sorghum (Sorghum bicolor) under cadmium and salinity stresses

AKBUDAK M. A., Filiz E.

GENOMICS , vol.111, no.4, pp.579-589, 2019 (SCI-Expanded)

2019

Aromatic amino acids biosynthesis genes identification and expression analysis under salt and drought stresses in Solanum lycopersicum L.

Filiz E., ÇETİN D., AKBUDAK M. A.

SCIENTIA HORTICULTURAE , vol.250, pp.127-137, 2019 (SCI-Expanded)

2019

Identification of O-acetylserine(thiol)lyase (OASTL) genes in sorghum (Sorghum bicolor) and gene expression analysis under cadmium stress

AKBUDAK M. A., Filiz E., UYLAŞ S.

MOLECULAR BIOLOGY REPORTS , vol.46, no.1, pp.343-354, 2019 (SCI-Expanded)

2018

Estimation of Nuclear DNA Content and Determination of Relationship Between Altitude and Genome Size of USDA Turkish Oat (Avena spp.) Collection

AKBUDAK M. A., Sakiroglu M., Tuna M.

GESUNDE PFLANZEN , vol.70, no.4, pp.171-178, 2018 (SCI-Expanded)

2018

DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum (Sorghum bicolor): genome-wide identification, characterization and expression profiles under cadmium and salt stresses

AKBUDAK M. A., Filiz E., KONTBAY K.

3 BIOTECH , vol.8, no.10, 2018 (SCI-Expanded)

2018

Genome-Wide Identification and Expression Profiling of Ascorbate Peroxidase (APX) and Glutathione Peroxidase (GPX) Genes Under Drought Stress in Sorghum (Sorghum bicolor L.)

AKBUDAK M. A., Filiz E., Vatansever R., KONTBAY K.

JOURNAL OF PLANT GROWTH REGULATION , vol.37, no.3, pp.925-936, 2018 (SCI-Expanded)

2018

Genome-wide identification and cadmium induced expression profiling of sulfate transporter (SULTR) genes in sorghum (Sorghum bicolor L.)

AKBUDAK M. A., Filiz E., KONTBAY K.

BIOMETALS , vol.31, no.1, pp.91-105, 2018 (SCI-Expanded)

2018

EVALUATING GENOTYPIC VARIATIONS AMONG DROUGHT-INDUCED SORGHUM CULTIVARS FOR ASCORBATE PEROXIDASES (APXS)

AKBUDAK M. A.

FRESENIUS ENVIRONMENTAL BULLETIN , vol.27, no.12, pp.8560-8567, 2018 (SCI-Expanded)

2017

Effect of gene order in DNA constructs on gene expression upon integration into plant genome

Akbudk M. A., Srivastava V.

3 BIOTECH , vol.7, 2017 (SCI-Expanded)

2017

Down-regulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase, cinnamoyl CoA reductase, and cinnamyl alcohol dehydrogenase leads to lignin reduction in rice (Oryza sativa L. ssp japonica cv. Nipponbare)

Ponniah S. K., Shang Z., Akbudak M. A., Srivastava V., Manoharan M.

PLANT BIOTECHNOLOGY REPORTS , vol.11, no.1, pp.17-27, 2017 (SCI-Expanded)

2014

Strong activity of FLPe recombinase in rice plants does not correlate with the transmission of the recombined locus to the progeny

Nguyen L. D., Underwood J. L., Nandy S., Akbudak M. A., Srivastava V.

PLANT BIOTECHNOLOGY REPORTS , vol.8, no.6, pp.455-462, 2014 (SCI-Expanded)

2013

Suppression of Arabidopsis genes by terminator-less transgene constructs

Akbudak M. A., Nicholson S. J., Srivastava V.

PLANT BIOTECHNOLOGY REPORTS , vol.7, no.4, pp.415-424, 2013 (SCI-Expanded)

2011

Improved FLP Recombinase, FLPe, Efficiently Removes Marker Gene from Transgene Locus Developed by Cre-lox Mediated Site-Specific Gene Integration in Rice

AKBUDAK M. A., Srivastava V.

MOLECULAR BIOTECHNOLOGY , vol.49, no.1, pp.82-89, 2011 (SCI-Expanded)

2010

Dosage-Dependent Gene Expression from Direct Repeat Locus in Rice Developed by Site-Specific Gene Integration

Akbudak M. A., More A. B., Nandy S., Srivastava V.

MOLECULAR BIOTECHNOLOGY , vol.45, no.1, pp.15-23, 2010 (SCI-Expanded)

Articles Published in Other Journals

2024

Overexpression of the tomato pathogenesis-related gene SlPR-1.9 confers increased tolerance to salt stress in Arabidopsis thaliana

YILDIZ K., AKBUDAK M. A.

Mediterranean Agricultural Sciences , 2024 (Peer-Reviewed Journal)

2022

Yeast Functional Screen to Determine cDNAs of European Alkali Grass (Puccinellia distans) Conferring Selenium (Se) Toxicity

Budak K., Akbudak M. A.

Journal of Agricultural Sciences , vol.6, no.4, pp.698-707, 2022 (Peer-Reviewed Journal)

2021

Antiproliferative Effect of Epilobium parviflorum Extracts on Colorectal Cancer Cell Line HT-29

AKBUDAK M. A., SUT T., ERUYGUR N., AKINCI E.

Romanian Biotechnological Letters , 2021 (Peer-Reviewed Journal)

2020

Sodyum azid (NaN3) ile muamele edilen arpa mutantlarının genetik çeşitliliğinin ISSR markörler ile belirlenmesi

GÜNGÖR H., AKBUDAK M. A., FILIZ E., YÜCE İ., DUMLUPINAR Z.

Derim , vol.37, no.1, pp.27-32, 2020 (Peer-Reviewed Journal)

2019

Expression patterns of ROS responsive genes on boron-stressed canola (Brassicanapus ssp. oleifera L.) following selenium treatment

ÖZEN M. O., KAYA S., UYLAŞ S., Durmus C., ARI E., AKBUDAK M. A.

Mediterranean Agricultural Sciences , vol.32, no.1, pp.35-41, 2019 (Peer-Reviewed Journal)

2018

Sorgum (Sorghum bicolor L.)’ da Sülfat Taşıyıcı (SULTR) Genlerin Kuraklık Stresi Altında İfadelerinin Belirlenmesi

AKBUDAK M. A.

Mediterranean Agricultural Sciences , vol.31, no.1, 2018 (Peer-Reviewed Journal)

2018

Farklı türlere ait yulaf aksesyonlarının genom büyüklüklerinin belirlenmesi ve ploidi seviyelerinin tespiti

AKBUDAK M. A., PAKSOY A., TUNA M.

Mediterranean Agricultural Sciences , vol.31, pp.49-54, 2018 (Peer-Reviewed Journal)

2017

Yeni Nesil Genom Düzenleme Teknikleri: ZFN, TALEN, CRISPR’lar ve Bitkilerde Kullanımı

AKBUDAK M. A., KONTBAY K.

Tarla Bitkileri Merkez Araştırma Enstitüsü Dergisi , vol.26, no.1, pp.111-126, 2017 (Peer-Reviewed Journal)

Refereed Congress / Symposium Publications in Proceedings

2022

EXPRESSION PROFILES OF TOMATO NITRATE TRANSPORTER 2 (NRT2) GENES UNDER ABIOTIC STRESS CONDITIONS

Cetın D., Fılız E., Akbudak M. A.

III. INTERNATIONAL CONFERENCE ON GLOBAL PRACTISE OF MULTIDISCIPLINARY SCIENTIFIC STUDIES, Girne, Cyprus (Kktc), 15 - 17 November 2022, pp.71

2018

Bioinformatics and Expression Analyses of ATP Sulfurylase (ATPS) Gene in Sorghum (Sorghum bicolor) UnderCadmium And Salinity Stresses

FILIZ E., AKBUDAK M. A.

INTERNATIONAL EURASIAN CONFERENCE ON BIOLOGICAL AND CHEMICAL SCIENCES, 26 - 27 April 2018

2018

The Comparative Analyses of Tryptophan Synthase (TS) Genes in Tomato (Solanum lycopersicum): BioinformaticsApproaches

FILIZ E., AKBUDAK M. A.

INTERNATIONAL EURASIAN CONFERENCE ON BIOLOGICAL AND CHEMICAL SCIENCES, 26 - 27 April 2018

2017

Biyoyakıt Üretimi İçin Terminatörsüz Vektörler Kullanılarak Çeltik Saplarında Lignin Miktarının Düşürülmesi

AKBUDAK M. A., KONTBAY K.

19. Ulusal Biyoteknoloji Kongresi, Turkey, 1 - 03 December 2017

2017

Reduction of Lignin Content in Rice Straw for Biofuel Production

PONNİAH S. K., ZENHUA S., AKBUDAK M. A., Srivastava V., MUTHUSAMY M.

Eurobiotech, 11 - 14 September 2017

2015

Evaluation of FLP Recombinase FLPwt and its variants FLPe and FLPo to obtain stable marker free transgenic rice

AKBUDAK M. A., NGUYEN L., VİBHA S.

Green Biotechnology, 21 - 23 September 2015

2014

Supression of Arabidopsis Genes by Terminator-less Transgene Constructs

AKBUDAK M. A., Nicholson S., Srivastava V.

Long Regulatory RNAs Conference, Pultusk, Poland, 13 - 18 October 2014

Supported Projects

2022 - 2023

TUBITAK Proje No: 221Z179

TUBITAK Project

Akbudak M. A. (Executive)

2016 - 2021

TUBITAK Proje No: 215Z086

TUBITAK Project

Akbudak M. A. (Executive)

2015 - 2021

TUBITAK 3501

TUBITAK Project

Akbudak M. A. (Executive)

Activities in Scientific Journals

2018 - Continues

Mediterranean Agricultural Sciences (Akdeniz Üniversitesi Ziraat Fakültesi Dergisi)

Scientific Committee Membership

2012 - 2015

Turkish Journal Of Biology

Scientific Committee Membership

Scientific Refereeing

October 2021

ROMANIAN BIOTECHNOLOGICAL LETTERS

SCI Journal

October 2021

TUBITAK Project

1002 - Quick Support Program, Akdeniz University, Turkey

October 2021

Project Supported by Higher Education Institutions

BAP Research Project, Akdeniz University, Turkey

September 2021

3 BIOTECH

SCI Journal

August 2021

The Romanian Biotechnological Letters

SCI Journal

July 2021

May 2021

TUBITAK Project

May 2021

Project Supported by Higher Education Institutions

April 2021

International Journal of Life Sciences and Biotechnology

Other Indexed Journal

April 2021

Turkish Journal of Botany

SCI Journal

March 2021

Turkish Journal of Agriculture and Forestry

SCI Journal

March 2021

TUBITAK Project

February 2021

Plant Cell Reports

SCI Journal

February 2021

International Journal of Genomics

SCI Journal

February 2021

Molecular Biotechnology

SCI Journal

February 2021

Project Supported by Higher Education Institutions

January 2021

International Journal of Genomics

SCI Journal

January 2021

Potato Research

SCI Journal

December 2020

BMC Genomics

SCI Journal

December 2020

November 2020

Natural Product Research

SCI Journal

November 2020

October 2020

Biotech Studies

Other Indexed Journal

October 2020

Biologia Futura

SCI Journal

October 2020

TUBITAK Project

September 2020

TUBITAK Project

August 2020

Conservation Physiology

SCI Journal

August 2020

Gene Reports

SCI Journal

July 2020

3 Biotech

SCI Journal

July 2020

TUBITAK Project

May 2020

Turkish Journal of Botany

SCI Journal

March 2020

Preparative Biochemistry & Biotechnology

SCI Journal

March 2020

Turkish Journal of Botany

SCI Journal

March 2020

Turkish Journal of Botany

SCI Journal

February 2020

Journal of the Science of Food and Agriculture

SCI Journal

February 2020

TUBITAK Project

January 2020

Plant Genetic Resources

SCI Journal

December 2019

3 Biotech

SCI Journal

October 2019

Scientia Horticulturae

SCI Journal

August 2019

Functional & Integrative Genomics

SCI Journal

July 2019

Scientific Reports

SCI Journal

March 2019

Scientia Horticulturae

SCI Journal

January 2019

Turkish Journal of Botany

SCI Journal

Congress and Symposium Activities

01 February 2020 - 01 February 2020

4th iPLANTA Conference

Attendee

Athens-Greece

01 January 2020 - 01 January 2020

3. Uluslararası Mardin Artuklu Bilimsel Araştırmalar Kongresi

Attendee

Mardin-Turkey

Scholarships

2013 - Continues

Araştırma Bursu

Official Institutions of Foreign Countries

2012 - Continues

Üçüncülük Ödülü, Plant Biotechnology Post-Doc Competition

Official Institutions of Foreign Countries

2011 - Continues

Birincilik Ödülü, Plant Biotechnology Post-Doc Competition

Official Institutions of Foreign Countries

2010 - Continues

Student Fellowship

Official Institutions of Foreign Countries

2009 - Continues

Ph.D. Research Poster Presentation Competition

Official Institutions of Foreign Countries

2008 - Continues

Faculty/Student Exchange Program Grant Award

Official Institutions of Foreign Countries

2008 - Continues

Spooner Scholar Award

Official Institutions of Foreign Countries

2006 - Continues

Doktora Bursu

Other International Organizations

2006 - Continues

Travel and Participation Award

Other International Organizations

2002 - Continues