Pathogenesis related protein-1 (PR-1) genes in tomato (Solanum lycopersicum L.): Bioinformatics analyses and expression profiles in response to drought stress

AKBUDAK M. A., YİLDİZ S., Filiz E.

GENOMICS, cilt.112, sa.6, ss.4089-4099, 2020 (SCI-Expanded) identifier identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 112 Sayı: 6
  • Basım Tarihi: 2020
  • Doi Numarası: 10.1016/j.ygeno.2020.07.004
  • Dergi Adı: GENOMICS
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus, Academic Search Premier, BIOSIS, CAB Abstracts, Chemical Abstracts Core, EMBASE, MEDLINE, Veterinary Science Database
  • Sayfa Sayıları: ss.4089-4099
  • Anahtar Kelimeler: Gene expression, Abiotic stress, RT-qPCR, MDA, H2O2, TRANSCRIPTION FACTOR, TOBACCO, PREDICTION, ACID, IDENTIFICATION, SUPERFAMILY, RESISTANCE, FAMILIES, BINDING, ROLES
  • Akdeniz Üniversitesi Adresli: Evet

Özet

The pathogenesis-related protein 1 (PR-1) gene family play important roles in the plant metabolism in response to biotic and abiotic stresses. The present study aimed genome-wide identification and bioinformatics analyses of PR-1 genes in tomato (Solanum lycopersicum L.). The analyses resulted in the identification of 13 novel SlPR-1 genes, each of which produce a protein belonging to the CAP superfamily (PF00188). The KEGG annotation analyses revealed that the SlPR-1 proteins functioned in the environmental information processing (09130). The expression patterns of the PR-1 genes and some stress-related physiological parameters were investigated in Fusarium oxysporum sensitive and tolerant tomato varieties under drought stress. The drought stress leaded upregulation of all SlPR-1 genes, reaching up to 50 folds. The results indicate that the SlPR-1 genes play active roles in response to drought. This is the first study exhibiting the expression profiles of SlPR-1 genes under an abiotic stress, drought, in tomato.